Skip to content
UPPMAX Documentation
Compress format
Search
GitHub
Home
Getting Started
Cluster user guide
Software
Databases
Support
Courses and workshops
UPPMAX main page
UPPMAX Documentation
GitHub
Home
Getting Started
Getting Started
Get started
Applying for a Project
Accessing UPPMAX
Accessing UPPMAX
Get inside the university networks
Change or reset password
Log in to Pelle
Log in to Bianca
Log in to Dardel (at PDC)
Linux tutorials
Linux tutorials
Working in Linux
Basic Linux commands
Cluster user guide
Cluster user guide
The UPPMAX clusters
System usage
Clusters
Clusters
Pelle
Bianca
Dardel (at PDC)
Storage systems
Storage systems
UPPMAX storage systems
Object storage Spirula
General cluster tools
General cluster tools
Start an interactive session
Modules
Slurm, the job scheduler
Slurm, the job scheduler
Slurm
Slurm on Pelle
Slurm on Bianca
Managing your project
Running jobs
Running jobs
Checking and optimising jobs
Runtime tips
Storage and compression
Screen
Data transfer
Data transfer
Transfer to/from Pelle
Transfer to/from Bianca
Get your old data from Rackham
Webexport
Software
Software
Overview
Software table
Text editors
Software-specific documentation
Software-specific documentation
Chemistry/physics/atmosphere
Chemistry/physics/atmosphere
GAMESS_US
Gaussian
GROMACS
WRF
Integrated development environments (IDE)
Integrated development environments (IDE)
Jupyter
RStudio
VSCode
VSCodium
Life Science
Life Science
BEAST
BEAST2
Cram
IGV
MetONTIIME
Tracer
Machine Learning and AI
Machine Learning and AI
NVIDIA DLF
Ollama
TensorFlow
Whisper
Programming languages
Programming languages
Julia
MATLAB
Python
Perl
R
Misc tools
Misc tools
Allinea DDT
darsync
gpuavail
jobstats
MariaDB
projplot
Rclone
SSH
SFTP
ThinLinc
Installing and development
Installing and development
Installing
Installing with conda
Compilers
Compiling serial code
Compiling parallel code
Debuggers
Nextflow & nf-core
Profilers
Singularity/Apptainer
Spack
Databases
Databases
Overview
BLAST databases available locally
NCBI taxonomy databases
DIAMOND protein alignment databases
Reference genomes
1000-genome project
Simons Genome Diversity Project datasets
Other bioinformatics-oriented local data resources
Support
Courses and workshops
Courses and workshops
Overview
AWK
Bianca intro
Bianca intermediate
File transfer
HPC Python
Intro to Python
Programming formalisms
R-MATLAB-Julia
Singularity
UPPMAX intro
UPPMAX main page
Compress format
¶
Page under construction